List of softwares developped by NeuroMod Members.
This section is currently being updated.M2OR
M2OR is a curated database centered on olfactory receptors (ORs), the key players in smell perception. It compiles 75,050 experimental measurements involving 1,257 OR sequences from 11 species, with precise molecular representation—including isomer distinctions—crucial for olfactory recognition. The database also details biological assay conditions, including cell lines, readout methods, and G-protein types.
MACULAR: Numerical platform for large scale simulations of the retina in pathological conditions
Macular is a simulation platform for the retina and the primary visual cortex (V1), designed to reproduce the response to visual stimuli, in normal vision conditions, or in altered conditions (pharmacology, pathology, development). Macular is organised into a layered structure that mimics the multi-layers organisation of the visual system.
nm-bridge
C++ library interfaced with R and Python for generating and estimating Hawkes-type (or other) interaction networks to model neural data (spike trains).
PRANAS: A new platform for retinal analysis and simulation
Retina simulator allowing large scale simulations while keeping a strong biological plausibility and a toolbox for the analysis of spike train population statistics.
OpenMEEG
C++ package for low-frequency bio-electromagnetism solving forward problems in the field of EEG and MEG.
UnitEvents
R package using neuro-stat code, to perform MTGAUE and permutation methods.
Tractography
This Julia package implements different tractography algorithms on CPU / GPU. Tractography aims at reconstructing white matter fiber bundles using diffusion-weighted MRI. It thus aims to study the structural connectivity of the brain.